Raw T1 MRI Brain Masked

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Import MCRIBS dHCP preterm subject into a brainvisa database
Simplified Morphologist 2025
Skull-stripped brain normalization
Skull-stripping

Associated formats

BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
JPEG image
MINC image
NIFTI-1 image
SPM image
TIFF image
TIFF(.tif) image

Associated ontology rules

  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/skull_stripped_<subject>
  • morphologist-bids-1.0 :
    • sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/segmentation/skull_stripped_<subject>
  • morphologist-bids-2.0 :
    • sub-{subject}/ses-{session}/{bids}/ana-{analysis}/segmentation/sub-<subject>_ses-<session>_<bids>_skull_stripped

    Key attributes

  • brainvisa-3.2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  center ,  subject ,  acquisition ,  analysis
  • morphologist-bids-1.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  acquisition ,  analysis
  • morphologist-bids-2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  bids ,  analysis